3D statistical facial reconstruction

The aim of craniofacial reconstruction is to produce a likeness of a face from the skull. Few works in computerized assisted facial reconstruction have been done in the past, due to poor machine performances and data availability, and major works are manually reconstructions. In this paper, we present an approach to build 3D statistical models of the skull and the face with soft tissues from the skull of one individual. Results on real data are presented and seem promising

Statistical skull models from 3D X-ray images

We present 2 statistical models of the skull and mandible built upon an elastic registration method of 3D meshes. The aim of this work is to relate degrees of freedom of skull anatomy, as static relations are of main interest for anthropology and legal medicine. Statistical models can effectively provide reconstructions together with statistical precision. In our applications, patient-specific meshes of the skull and the mandible are high-density meshes, extracted from 3D CT scans. All our patient-specific meshes are registrated in a subject-shared reference system using our 3D-to-3D elastic matching algorithm. Registration is based upon the minimization of a distance between the high density mesh and a shared low density mesh, defined on the vertexes, in a multi resolution approach. A Principal Component analysis is performed on the normalised registrated data to build a statistical linear model of the skull and mandible shape variation. The accuracy of the reconstruction is under the millimetre in the shape space (after rigid registration). Reconstruction errors for Scan data of tests individuals are below registration noise. To take in count the articulated aspect of the skull in our model, Kernel Principal Component Analysis is applied, extracting a non-linear parameter associated with mandible position, therefore building a statistical articulated 3D model of the skull.Comment: Proceedings of the Second International Conference on Reconstruction of Soft Facial Parts RSFP'200

Hardware/software 2D-3D backprojection on a SoPC platform

International audienceThe reduction of image reconstruction time is needed to spread the use of PET for research and routine clinical practice. In this purpose, this article presents a hardware/software architecture for the acceleration of 3D backprojection based upon an efficient 2D backprojection. This architecture has been designed in order to provide a high level of parallelism thanks to an efficient management of the memory accesses which would have been otherwise strongly slowed by the external memory. The reconstruction system is embedded in a SoPC platform (System on Programmable Chip), the new generation of reconfigurable circuit. The originality of this architecture comes from the design of a 2D Adaptative and Predictive Cache (2D-AP Cache) which has proved to be an efficient way to overcome the memory access bottleneck. Thanks to a hierarchical use of this cache, several backprojection operators can run in parallel, accelerating in this manner noteworthy the reconstruction process. This 2D reconstruction system will next be used to speed up 3D image reconstruction

Graph-based skin lesion segmentation of multispectral dermoscopic images

International audienceAccurate skin lesion segmentation is critical for automated early skin cancer detection and diagnosis. We present a novel method to detect skin lesion borders in multispectral der-moscopy images. First, hairs are detected on infrared images and removed by inpainting visible spectrum images. Second, skin lesion is pre-segmented using a clustering of a superpixel partition. Finally, the pre-segmentation is globally regular-ized at the superpixel level and locally regularized in a narrow band at the pixel level

High Speed 3D Tomography on CPU, GPU, and FPGA

12 pages; 50% d'acceptationInternational audienceBack-projection (BP) is a costly computational step in tomography image reconstruction such as positron emission tomography (PET). To reduce the computation time, this paper presents a pipelined, prefetch, and parallelized architecture for PET BP (3PA-PET). The key feature of this architecture is its original memory access strategy, masking the high latency of the external memory. Indeed, the pattern of the memory references to the data acquired hinders the processing unit. The memory access bottleneck is overcome by an efficient use of the intrinsic temporal and spatial locality of the BP algorithm. A loop reordering allows an efficient use of general purpose processor's caches, for software implementation, as well as the 3D predictive and adaptive cache (3D-AP cache), when considering hardware implementations. Parallel hardware pipelines are also efficient thanks to a hierarchical 3D-AP cache: each pipeline performs a memory reference in about one clock cycle to reach a computational throughput close to 100%. The 3PA-PET architecture is prototyped on a system on programmable chip (SoPC) to validate the system and to measure its expected performances. Time performances are compared with a desktop PC, a workstation, and a graphic processor unit (GPU)

Segmentation d'images couleurs et multispectrales de la peau

La délimitation précise du contour des lésions pigmentées sur des images est une première étape importante pour le diagnostic assisté par ordinateur du mélanome. Cette thèse présente une nouvelle approche de la détection automatique du contour des lésions pigmentaires sur des images couleurs ou multispectrales de la peau. Nous présentons d'abord la notion de minimisation d'énergie par coupes de graphes en terme de Maxima A-Posteriori d'un champ de Markov. Après un rapide état de l'art, nous étudions l'influence des paramètres de l'algorithme sur les contours d'images couleurs. Dans ce cadre, nous proposons une fonction d'énergie basée sur des classifieurs performants (Machines à support de vecteurs et Forêts aléatoires) et sur un vecteur de caractéristiques calculé sur un voisinage local. Pour la segmentation de mélanomes, nous estimons une carte de concentration des chromophores de la peau, indices discriminants du mélanomes, à partir d'images couleurs ou multispectrales, et intégrons ces caractéristiques au vecteur. Enfin, nous détaillons le schéma global de la segmentation automatique de mélanomes, comportant une étape de sélection automatique des "graines" utiles à la coupure de graphes ainsi que la sélection des caractéristiques discriminantes. Cet outil est comparé favorablement aux méthodes classiques à base de coupure de graphes en terme de précision et de robustesse.Accurate border delineation of pigmented skin lesion (PSL) images is a vital first step in computer-aided diagnosis (CAD) of melanoma. This thesis presents a novel approach of automatic PSL border detection on color and multispectral skin images. We first introduce the concept of energy minimization by graph cuts in terms of maximum a posteriori estimation of a Markov random field (MAP-MRF framework). After a brief state of the art in interactive graph-cut based segmentation methods, we study the influence of parameters of the segmentation algorithm on color images. Under this framework, we propose an energy function based on efficient classifiers (support vector machines and random forests) and a feature vector calculated on a local neighborhood. For the segmentation of melanoma, we estimate the concentration maps of skin chromophores, discriminating indices of melanomas from color and multispectral images, and integrate these features in a vector. Finally, we detail an global framework of automatic segmentation of melanoma, which comprises two main stages: automatic selection of "seeds" useful for graph cuts and the selection of discriminating features. This tool is compared favorably to classic graph-cut based segmentation methods in terms of accuracy and robustness.SAVOIE-SCD - Bib.électronique (730659901) / SudocGRENOBLE1/INP-Bib.électronique (384210012) / SudocGRENOBLE2/3-Bib.électronique (384219901) / SudocSudocFranceF

New data model for graph-cut segmentation: application to automatic melanoma delineation

International audienceWe propose a new data model for graph-cut image segmentation, defined according to probabilities learned by a classification process. Unlike traditional graph-cut methods, the data model takes into account not only color but also texture and shape information. For melanoma images, we also introduce skin chromophore features and automatically derive "seed" pixels used to train the classifier from a coarse initial segmentation. On natural images, our method successfully segments objects having similar color but different texture. Its application to melanoma delineation compares favorably to manual delineation and related graph-cut segmentation methods

Local order and magnetic behavior of amorphous and nanocrystalline yttrium iron garnet produced by swift heavy ion irradiations

International audienceThin epitaxial films of gallium or scandium-doped and undoped yttrium iron garnet (Y3Fe5O12 or YIG) on nonmagnetic Gd3Ga5O12 substrates were irradiated with swift heavy ions (50 MeV 32S, 50 MeV 63Cu, and 235 MeV 84Kr) in the electronic slowing down regime. The mean electronic stopping power in the films was always larger than the threshold for amorphous track formation in YIG which is around 4.5 MeV/μm in this low ion-velocity range. The local order and magnetic properties of the damaged films were then studied at room temperature by 57Fe conversion electron Mössbauer spectroscopy (CEMS) and x-ray absorption spectroscopy (XAS) at the iron K edge in the fluorescence mode. In the case of paramagnetic gallium or scandium-substituted films (YIG:Ga, YIG:Sc) irradiated with 32S or 63Cu ions, the CEMS data show that the tetrahedral Fe3+ sites are preferentially damaged, while the octahedral sites are conserved. This is confirmed by the decrease of the pre-edge peak in the XAS data of the ferrimagnetic undoped YIG films showing that the number of tetrahedral iron sites is decreased in the amorphous phase obtained with 84Kr ion irradiation, due to the formation of fivefold-coordinated pyramidal sites, as already found in a previous study on undoped YIG sinters amorphized by 3.5 GeV 132Xe ion irradiation. In the case of the nanophase induced by ion-beam recrystallization of the tracks with 32S or 63Cu irradiations, a further decrease of the pre-edge peak is found. This is interpreted by (i) an increase of the fivefold-coordinated pyramidal sites and/or (ii) a probable decomposition of the garnet into orthoferrite (YFeO3) and haematite (α-Fe2O3) under the high-pressure and high-temperature conditions in the thermal spike generated by the ions. The CEMS data of irradiated undoped YIG also show that both the amorphous and nanocrystalline phases have a paramagnetic behavior at room temperature. The nanophase magnetic behavior is analyzed on the basis of a superparamagnetic relaxation above the blocking temperature, whereas the amorphous phase behavior is ascribed to a speromagnetic state